Information for 1-TCTTGCTGTGCRT (Motif 4)

A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
Reverse Opposite:
C G T A A G T C A C T G A T G C G C T A G T A C C G T A A T C G G A T C G T C A C T G A A C T G C T G A
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.772
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.08%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.8 +/- 26.0bp
Average Position of motif in Background61.3 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGCTGTGCRT
NNTCCTGCTGTGNNN
 A C G T A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGCTGTGCRT
TNTCCTGCTGTGNNG
 A C G T A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGCTGTGCRT
TCNCCTGCTGNGNNN
 A C G T A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGCTGTGCRT
CCCCCTGCTGTG---
 A C G T A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCTTGCTGTGCRT
-CCTGCTGAGH--
 A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCTTGCTGTGCRT
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCTTGCTGTGCRT
----GCTGTG---
 A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCTTGCTGTGCRT
CACTTCCTGT----
 A C G T A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTTGCTGTGCRT
ACTTCCTGTT---
 A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCTTGCTGTGCRT
--WDNCTGGGCA-
 A G C T A G T C A G C T A C G T C A T G A T G C A C G T A C T G C A G T T A C G G T A C C T A G A C G T
A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T