Information for 5-CCYTSWCYTKAMTWGT (Motif 14)

A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C C G A T C T G A A C T G A C G T G T A C C G T A C T A G A T C G C G A T A T G C C G T A C T A G A C T G A C T G
p-value:1e-5
log p-value:-1.313e+01
Information Content per bp:1.837
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.5 +/- 21.4bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCYTSWCYTKAMTWGT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCYTSWCYTKAMTWGT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCYTSWCYTKAMTWGT
---TGACCTYA-----
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCYTSWCYTKAMTWGT
-NNTNTCATGAATGT-
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
A C G T A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

TP73/MA0861.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCYTSWCYTKAMTWGT-
GACATGTCNNGACATGTN
 A C G T A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T A C G T
C A T G C T G A T A G C C T G A G C A T A C T G G A C T G A T C G A T C T C G A C T A G C T G A A T G C G C T A G A C T A C T G A G C T G T A C

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CCYTSWCYTKAMTWGT----
-----NNATNAATTGTTTNN
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.50
Offset:8
Orientation:forward strand
Alignment:CCYTSWCYTKAMTWGT------
--------AAAATTGTTATGAA
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

TP63/MA0525.2/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCYTSWCYTKAMTWGT-
GACATGTCCCAACATGTT
 A C G T A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T A C G T
C A T G C T G A A G T C C T G A G C A T A C T G G A C T G A T C T G A C A G T C C T G A C T G A A G T C C G T A G A C T A C T G G A C T G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CCYTSWCYTKAMTWGT
-------TTGACTTTT
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCYTSWCYTKAMTWGT
---TGACCTTGAT---
 A G T C A G T C A G T C A C G T A T C G C G T A A T G C A G T C A C G T A C T G C G T A G T A C A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T