Information for 8-GACATTATAATGC (Motif 13)

A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T A C G T C G T A C G A T G T C A C G T A A C G T A T C G A C G T A G T C
p-value:1e-5
log p-value:-1.313e+01
Information Content per bp:1.943
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.8 +/- 26.4bp
Average Position of motif in Background9.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GACATTATAATGC--
NANTATTATAATTNNN
 A C G T A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GACATTATAATGC--
TAAGATTATAATACGG
 A C G T A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GACATTATAATGC--
NNTAATTATAATNANN
 A C G T A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GACATTATAATGC--
NNTAATTATAATTNNN
 A C G T A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GACATTATAATGC----
--CTTTGTTATGCAAAT
 A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GACATTATAATGC----
--CATTGTTATGCAAAT
 A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Mecom/MA0029.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACATTATAATGC
AAGATAAGATAACA-
 A C G T A C G T A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GACATTATAATGC--
-------TAATCCCN
 A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GACATTATAATGC
-----GKTAATGR
 A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GACATTATAATGC-
------TTAATCCT
 A C T G C G T A A T G C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T