Information for 2-GGAGGCAAGTCGC (Motif 4)

A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
Reverse Opposite:
A C T G A T G C A C T G G T C A A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G T C
p-value:1e-11
log p-value:-2.641e+01
Information Content per bp:1.939
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 23.3bp
Average Position of motif in Background36.4 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGAGGCAAGTCGC
-AAGGCAAGTGT-
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAAGTCGC
GGGCGGGAAGG---
 A C G T A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GGAGGCAAGTCGC
NTNNNAGGAGTCTCNTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGAGGCAAGTCGC
---GGAAATTCCC
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGAGGCAAGTCGC
---GGAAATTCCC
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

HES5/MA0821.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGAGGCAAGTCGC-
--TGGCACGTGCCG
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C A C G T
A C G T A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGAGGCAAGTCGC
---GGAAATCCCC
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGAGGCAAGTCGC
-CAGGTAAGTAT-
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGAGGCAAGTCGC
CWGGCGGGAA-----
 A C G T A C G T A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GGAGGCAAGTCGC-
--TGGCACGTGCCA
 A C T G C T A G G T C A A C T G A C T G A G T C C G T A C G T A A C T G A C G T A G T C A T C G A G T C A C G T
A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A