Information for 4-CTTAGGAGAA (Motif 6)

T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T G T A C A G C T A G T C A G T C C A G T C G T A C G T A A C T G
p-value:1e-10
log p-value:-2.459e+01
Information Content per bp:1.857
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif71.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets46.9 +/- 21.6bp
Average Position of motif in Background48.7 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat4/MA0518.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTTAGGAGAA----
TTTCCAGGAAATGG
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T A C G T A C G T A C G T
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTAGGAGAA-
NTTTCTNAGAAA
 A C G T T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTTAGGAGAA-
-GGAGGGGGAA
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T
A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

STAT3/MA0144.2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTAGGAGAA-
CTTCTGGGAAA
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

STAT1/MA0137.3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTAGGAGAA-
TTTCCAGGAAA
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGGAGAA---
ATTTCCNGGAAATN
 A C G T T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T A C G T A C G T
C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTAGGAGAA
---TGGGGA-
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A
A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTTAGGAGAA--
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTTAGGAGAA
CTTCCNGGAA
 T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTTAGGAGAA--
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T T G A C A C G T A C G T G T C A A C T G A C T G C T G A A C T G C G T A G T C A A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T