Information for 9-ATGTCGGACA (Motif 18)

G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C G T A C A C T G G T C A A G T C C G T A A C G T
p-value:1e-7
log p-value:-1.706e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.7 +/- 20.6bp
Average Position of motif in Background51.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGTCGGACA
TAATGGCGGNC-
 A C G T A C G T G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATGTCGGACA---
-TGTCTGDCACCT
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGTCGGACA
AAYTAGGTCA
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATGTCGGACA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGTCGGACA---
CTGTCTGTCACCT
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATGTCGGACA--
NTGATTGACAGN
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATGTCGGACA--
BTGABTGACAGS
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ATGTCGGACA---
-TGAGTGACAGSC
 G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T A C G T
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATGTCGGACA----
TAAAGTCGTAAAATAG
 A C G T A C G T G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0108.1_Atf1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATGTCGGACA--
GAATGACGAATAAC
 A C G T A C G T G T C A A C G T A C T G A C G T T G A C C A T G A C T G G T C A G T A C C G T A A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C