Information for 6-TGATGGTAAT (Motif 15)

C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T
Reverse Opposite:
C G T A A C G T G A C T C T G A A G T C A G T C C T G A A C G T T G A C C G T A
p-value:1e-9
log p-value:-2.192e+01
Information Content per bp:1.683
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.26%
Number of Background Sequences with motif386.3
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets46.3 +/- 28.5bp
Average Position of motif in Background50.9 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGATGGTAAT---
-TATGCWAATBAV
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGATGGTAAT--
TTATGCAAATTA
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGATGGTAAT--
TTATGCAAATTA
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGATGGTAAT--
ATTATGCTAATTT
 A C G T C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGATGGTAAT---
-WATGCAAATGAG
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGATGGTAAT-
AATATGCAAATT
 A C G T C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGATGGTAAT
-TATGCAAAT
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGATGGTAAT
TTATGCAAAT
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGATGGTAAT
-TATGCAAAT
 C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGATGGTAAT----
NAGATWNBNATCTNN
 A C G T C G A T A C T G T G C A G A C T C T A G C T A G G A C T C T G A T G C A G C A T A C G T A C G T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C