Information for 5-GGCCTGTAATTACTTG (Motif 5)

A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
Reverse Opposite:
A G T C C G T A C G T A T C A G A C G T G C T A G T C A G A C T A C G T T C G A G A T C C G T A C A T G T A C G G T A C G T A C
p-value:1e-15
log p-value:-3.650e+01
Information Content per bp:1.699
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 28.5bp
Average Position of motif in Background41.7 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0055.1_Hoxa7_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
TNCCATTAATTACTNC
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

PH0062.1_Hoxb7/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
TNNCATTAATTANTNC
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0028.1_En1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG--
--GNATTAATTAGTTNNC
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
NNNCACTAATTANTNN
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

MEOX2/MA0706.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
----NTTAATTACN--
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T A C G T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
----GNTAATTAGN--
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T A C G T

PH0106.1_Msx1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG--
--NNATTAATTAGTNGNN
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G A C G T A C G T
A C G T A C G T C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG
-------AATTATT--
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGCCTGTAATTACTTG---
---NNNTATTGAATTGNNN
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCCTGTAATTACTTG-
GAAAATTAATTACTTTG
 A C T G A C T G A G T C G A T C C G A T C T A G A G C T C G T A C T G A A C G T C A G T C G T A A G T C A C G T C G A T A C T G A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G