Information for 4-CAAGGYCCCGCGGNAA (Motif 4)

T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
Reverse Opposite:
C G A T A G C T A G T C T A G C A G T C A C T G A T G C A C T G C T A G A T C G C T G A G A T C A T G C C G A T A G C T A C T G
p-value:1e-16
log p-value:-3.896e+01
Information Content per bp:1.716
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 20.0bp
Average Position of motif in Background56.0 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAGGYCCCGCGGNAA
CAAGGHCANV------
 T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAGGYCCCGCGGNAA
NTCAAGGTCA--------
 A C G T A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAAGGYCCCGCGGNAA
---GGTCCCGCCC---
 T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAAGGYCCCGCGGNAA
BTCAAGGTCA--------
 A C G T A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAAGGYCCCGCGGNAA
TATTCAAGGTCATGCGA---
 A C G T A C G T A C G T A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGYCCCGCGGNAA
TCAAGGTCAN-------
 A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAAGGYCCCGCGGNAA--
-AAATTCCCCCCGGAAGT
 T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A A C G T A C G T
A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGYCCCGCGGNAA
AAGTTCAAGGTCAGC------
 A C G T A C G T A C G T A C G T A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAAGGYCCCGCGGNAA
TCAAGGTCAT-------
 A C G T T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAAGGYCCCGCGGNAA
-AAGGTCAC-------
 T G A C T C G A C G T A A T C G C T A G A G C T A T G C A G T C G T A C A T C G A G T C T A C G A C T G C T A G C T G A G C T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T