Information for 20-RRATGMASMAMKCATA (Motif 32)

C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
Reverse Opposite:
A C G T C T G A A C G T A C T G G T C A A C T G A C G T C A G T A T G C A G C T A C T G A G T C C G T A A C G T A G C T A G T C
p-value:1e-6
log p-value:-1.449e+01
Information Content per bp:1.819
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.7 +/- 25.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA-
--ATGCATWATGCATRW
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A A C G T
A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA-
--ATGAATWATTCATGA
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A A C G T
A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
--ATGCATAATTCA--
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA---
--AAGGCGAAATCATCGCA
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A A C G T A C G T A C G T
A C G T A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PH0014.1_Cphx/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
--ATGATCGAATCAAA
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
A C G T A C G T C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
--ATGAATAATTAATG
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
A C G T A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RRATGMASMAMKCATA--
--ATGCATAATTAATGAG
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A A C G T A C G T
A C G T A C G T C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

ATF4/MA0833.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
GGATGATGCAATA---
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T A C G T A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
TTATGTACTAATAA--
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:RRATGMASMAMKCATA
AAATGGACCAATCAG-
 C T A G C T G A C G T A A C G T A C T G G T A C C T G A A T C G G T A C C G T A G T A C A C G T A G T C C G T A A G C T C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T