Information for 8-ATAGTCCAGA (Motif 20)

T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A
Reverse Opposite:
A C G T A T G C A C G T C T A G A T C G C T G A A G T C A C G T C G T A A G C T
p-value:1e-10
log p-value:-2.317e+01
Information Content per bp:1.812
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif123.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets52.7 +/- 28.9bp
Average Position of motif in Background48.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATAGTCCAGA--
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C G T T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATAGTCCAGA--
--TGTCTAGACG
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATAGTCCAGA--
--ATGCCAGACN
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATAGTCCAGA-------
CAAATCCAGACATCACA
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATAGTCCAGA---
NNTAATCCNGNCNN
 A C G T T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ATAGTCCAGA-----
-----CCAGACRSVB
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCCAGA
TCCAATCCACA
 A C G T T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATAGTCCAGA---
-----CCAGACAG
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCCAGA
ACTAGTTAAC-
 A C G T T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ATAGTCCAGA--
SSAATCCACANN
 T C G A A C G T C G T A A C T G A G C T A T G C G A T C C G T A A T C G C G T A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C