| p-value: | 1e-4 |
| log p-value: | -1.151e+01 |
| Information Content per bp: | 1.535 |
| Number of Target Sequences with motif | 205.0 |
| Percentage of Target Sequences with motif | 24.06% |
| Number of Background Sequences with motif | 8646.5 |
| Percentage of Background Sequences with motif | 18.17% |
| Average Position of motif in Targets | 52.9 +/- 27.7bp |
| Average Position of motif in Background | 49.9 +/- 29.3bp |
| Strand Bias (log2 ratio + to - strand density) | 0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.23 |
| Motif File: | file (matrix)
reverse opposite |
| SVG Files for Logos: | forward logo
reverse opposite |
TATA-Box(TBP)/Promoter/Homer
| Match Rank: | 1 |
| Score: | 0.75
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --TTTTAAAAGG
GNCTATAAAAGG |
|
|
|
CHR(?)/Hela-CellCycle-Expression/Homer
| Match Rank: | 2 |
| Score: | 0.69
| | Offset: | -3
| | Orientation: | forward strand |
| Alignment: | ---TTTTAAAAGG
CGGTTTCAAA--- |
|
|
|
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer
| Match Rank: | 3 |
| Score: | 0.68
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TTTTAAAAGG
TTTTATKRGG |
|
|
|
LIN54/MA0619.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.67
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TTTTAAAAGG
NATTCAAAT-- |
|
|
|
HOXC13/MA0907.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.67
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TTTTAAAAGG
NTTTTACGAGN |
|
|
|
PH0068.1_Hoxc13/Jaspar
| Match Rank: | 6 |
| Score: | 0.65
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---TTTTAAAAGG---
NAATTTTACGAGNTNN |
|
|
|
PH0048.1_Hoxa13/Jaspar
| Match Rank: | 7 |
| Score: | 0.64
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---TTTTAAAAGG---
ANATTTTACGAGNNNN |
|
|
|
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer
| Match Rank: | 8 |
| Score: | 0.63
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TTTTAAAAGG
TTTTATTRGN |
|
|
|
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer
| Match Rank: | 9 |
| Score: | 0.63
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | TTTTAAAAGG-
-TTTAATTGCN |
|
|
|
POL012.1_TATA-Box/Jaspar
| Match Rank: | 10 |
| Score: | 0.62
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TTTTAAAAGG-----
GTATAAAAGGCGGGG |
|
|
|
