Information for 5-GGAGCACTCACTT (Motif 3)

C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
Reverse Opposite:
C T G A C G T A A C T G A C G T A C T G T C G A T A C G A C G T T A C G A G T C C G A T A G T C A G T C
p-value:1e-15
log p-value:-3.462e+01
Information Content per bp:1.790
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.5 +/- 19.6bp
Average Position of motif in Background56.5 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACTCACTT
GGGAGGACNG----
 A C G T C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGAGCACTCACTT
RGGGCACTAACY-
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGCACTCACTT
-AAGCACTTAA--
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCACTCACTT
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGAGCACTCACTT--
AGCGGCACACACGCAA
 A C G T C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGAGCACTCACTT
GGACCACCCACG-
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGAGCACTCACTT--
-----MRSCACTYAA
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGAGCACTCACTT----
--AGAAATGACTTCCCT
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACTCACTT
CGGAGC--------
 A C G T C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGAGCACTCACTT---
------ACCACTTGAA
 C T A G A C T G G C T A A C T G A T G C G T C A A T G C A C G T T G A C C G T A A G T C A C G T G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A