Information for 12-TTATTAAAACCAG (Motif 7)

A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G C T A C G T A C G T A C G T C G T A C T G A A C G T G T C A C G T A
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.2 +/- 13.9bp
Average Position of motif in Background50.1 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTATTAAAACCAG
CCGTATTATAAACAA
 A C G T A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTATTAAAACCAG
--ATTAAA-----
 A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTATTAAAACCAG
NTAATTAATAT---
 A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTATTAAAACCAG
GGGTTTAATTAAAATTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTATTAAAACCAG--
TGACANARRCCAGRC
 A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTATTAAAACCAG----
YTAATTRAWWCCAGATGT
 A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G A C G T A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTATTAAAACCAG
GTAATTAA------
 A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TTATTAAAACCAG
CGAATTAATTAAAAACC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTATTAAAACCAG
AATATTAATAAAGA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTATTAAAACCAG
ACTAATTAAA-----
 A C G T A C G T A C G T A C G T C G T A A G C T A C G T C G T A C G T A C G T A C T G A G T A C G T A C C G T A A C T G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T A C G T