Information for 4-GTGCTGCCAGCCSCGG (Motif 7)

A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
Reverse Opposite:
A G T C G T A C A C T G T A C G A C T G A T C G A T G C A C G T A T C G A T C G A G T C C G T A A T C G A G T C C G T A A G T C
p-value:1e-13
log p-value:-3.156e+01
Information Content per bp:1.798
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.5 +/- 18.5bp
Average Position of motif in Background64.3 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTGCTGCCAGCCSCGG
GGTGYTGACAGS-----
 A C G T A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTGCTGCCAGCCSCGG
---TTGCCAAG-----
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTGCTGCCAGCCSCGG
--VBTGWCAGCB----
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GTGCTGCCAGCCSCGG
---ATGCCAACC----
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTGCTGCCAGCCSCGG
-AGGTGHCAGACA---
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTGCTGCCAGCCSCGG
-AGGTGNCAGACAG--
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTGCTGCCAGCCSCGG
-AGGTGTCA-------
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTGCTGCCAGCCSCGG
--CGTGCCAAG-----
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GTGCTGCCAGCCSCGG
--RHTGWCAR------
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTGCTGCCAGCCSCGG
-ARNTGACA-------
 A C T G G C A T A C T G A T G C A C G T A C T G A T G C A T G C C G T A A T C G A T G C G T A C A T C G A G T C A C T G A C T G
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T