Information for 21-GAGAGATCACAABGGG (Motif 28)

A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
Reverse Opposite:
A G T C A G T C A G T C T C G A A G C T A C G T C T A G A C G T A T C G C G T A C G A T A T G C A C G T A T G C C G A T G T A C
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.749
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.6 +/- 17.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG----
---NNTNNACAATGGGANNN
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG
-------AACAAAGG-
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGATCACAABGGG-
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG
-------RACAAWGG-
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GAGAGATCACAABGGG
AAGGCGAAATCATCGCA--
 A C G T A C G T A C G T A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG
------GAACAATGGN
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG
--------ACAAAG--
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG
-----VRRACAAWGG-
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GAGAGATCACAABGGG----
--------ACAAAGGNBCCT
 A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GAGAGATCACAABGGG
NRRTGACGTCAT------
 A C G T A C G T A C T G C G T A A T C G G T C A T A C G C G T A C G A T A T G C C G T A A G T C G T C A C T G A A G C T C T A G C T A G C T A G
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T