Information for 17-GGCTTAGCAGCAC (Motif 27)

A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A C G T A C T G A G T C A C G T C T G A C G T A A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.951
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 21.0bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCTTAGCAGCAC
GGATTAGC-----
 A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCTTAGCAGCAC
-SCCTAGCAACAG
 A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCTTAGCAGCAC-
CCGCATAGCAACGGA
 A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTAGCAGCAC
NGGATTAN------
 A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GGCTTAGCAGCAC
AGGGGGATTAGCTGCC-
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTAGCAGCAC
GGGATTANN-----
 A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTAGCAGCAC
NGGGATTA-------
 A C G T A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTAGCAGCAC
ATGACTCAGCAD---
 A C G T A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
T C G A C G A T A C T G G C T A T A G C C G A T G T A C C G T A A C T G T G A C C G T A C A G T A C G T A C G T A C G T

Bach1::Mafk/MA0591.1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGCTTAGCAGCAC
AGGATGACTCAGCAC---
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
C T G A A T C G T A C G T C G A G C A T A C T G C G T A A T G C C A G T T G A C C T G A A T C G A G T C C G T A A T G C A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGCTTAGCAGCAC
AAGAGGATTAG------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A G C T C G T A A C T G A G T C G T C A A C T G A G T C C G T A A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T