Information for 10-CGGTGGATGGCAC (Motif 12)

A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
Reverse Opposite:
A C T G A G C T A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A T G C A T G C A C T G
p-value:1e-4
log p-value:-1.093e+01
Information Content per bp:1.941
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 25.3bp
Average Position of motif in Background73.9 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CGGTGGATGGCAC
----GGTTGGCAT
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGTGGATGGCAC---
NGTAGGTTGGCATNNN
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGTGGATGGCAC
--GTGGAT-----
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CGGTGGATGGCAC-
-----NTTGGCANN
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CGGTGGATGGCAC
--GTTAATGGCC-
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGGTGGATGGCAC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGGTGGATGGCAC
TCGGTGGTCGCN--
 A C G T A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGGTGGATGGCAC
----NGTGGGCAT
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGTGGATGGCAC
-CGTGGGTGGTCC
 A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

ZBTB7C/MA0695.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGGATGGCAC
NTCGGTGGTCGC---
 A C G T A C G T A G T C A T C G A T C G A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C C T G A A G T C
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T A C G T A C G T