Information for 7-AGCCTGCAAGACTGTG (Motif 13)

C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C C G T A A C T G A C G T A G T C A C G T A C G T A T C G A G T C C T G A A C T G A C T G G T A C C G A T
p-value:1e-10
log p-value:-2.440e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 18.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.52
Offset:10
Orientation:forward strand
Alignment:AGCCTGCAAGACTGTG
----------GCTGTG
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCCTGCAAGACTGTG
GTCATGCHTGRCTGS-
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGCCTGCAAGACTGTG
-AGGTGHCAGACA---
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGCCTGCAAGACTGTG
-AGGTGNCAGACAG--
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGCCTGCAAGACTGTG
------CCAGACAG--
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AGCCTGCAAGACTGTG----
NTNATGCAAYMNNHTGMAAY
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G A C G T A C G T A C G T A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:AGCCTGCAAGACTGTG
---ATGCCAGACN---
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.46
Offset:9
Orientation:forward strand
Alignment:AGCCTGCAAGACTGTG----
---------GTCTGTGGTTT
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.46
Offset:6
Orientation:reverse strand
Alignment:AGCCTGCAAGACTGTG
------BCAGACWA--
 C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.45
Offset:-4
Orientation:reverse strand
Alignment:----AGCCTGCAAGACTGTG
TGGCAGNCTGCCAG------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C A G C T A C T G A T G C G T C A C G T A A C T G G T C A A G T C A C G T A C T G A C G T A T C G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T