Information for 5-CTGTGACTGTGAC (Motif 6)

A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C
Reverse Opposite:
A C T G A C G T A T G C G T C A A G T C C G T A A C T G C G A T G T A C C G T A A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.458e+01
Information Content per bp:1.901
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.3 +/- 28.9bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGTGACTGTGAC--
---TGTCTGDCACCT
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGTGACTGTGAC---
CAATCACTGGCAGAAT
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGTGACTGTGAC--
--CTGTCTGTCACCT
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGTGACTGTGAC
GCTGTG--------
 A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTGACTGTGAC
CTGTTCCTGG---
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGACTGTGAC
TCAGNGAGCGTGAC
 A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CTGTGACTGTGAC---
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T A C G T A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGTGACTGTGAC
CTGTTGCTAGGS-
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTGACTGTGAC---
-GGTCANNGTGACCTN
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTGTGACTGTGAC-
----VGCTGWCAVB
 A G T C A C G T A C T G A C G T A C T G C G T A A G T C A C G T A C T G A C G T A T C G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C