Information for 1-YGCCACCTRGTGGCCA (Motif 1)

A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
Reverse Opposite:
A G C T A C T G C T A G G A T C A G T C C T G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G G A T C C T A G
p-value:1e-85
log p-value:-1.960e+02
Information Content per bp:1.707
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.68%
Number of Background Sequences with motif38.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets54.2 +/- 15.8bp
Average Position of motif in Background47.9 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---YGCCACCTRGTGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----YGCCACCTRGTGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------YGCCACCTRGTGGCCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YGCCACCTRGTGGCCA
-GCCATCTGTT-----
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YGCCACCTRGTGGCCA
GGCCYCCTGCTGDGH-
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----YGCCACCTRGTGGCCA
GGTCCCGCCCCCTTCTC----
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YGCCACCTRGTGGCCA
-ACCATCTGTT-----
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YGCCACCTRGTGGCCA
-ACCACCTGTT-----
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YGCCACCTRGTGGCCA
--CCCCCTGCTGTG--
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YGCCACCTRGTGGCCA
SNGCACCTGCHS----
 A G T C C T A G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T G A C T C G A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T