Information for 3-CACGTGTGTG (Motif 3)

A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
Reverse Opposite:
A G T C G T C A A G T C G T C A A G T C T C G A G T A C C T A G A G C T A T C G
p-value:1e-14
log p-value:-3.240e+01
Information Content per bp:1.866
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif342.3
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets47.2 +/- 24.6bp
Average Position of motif in Background47.5 +/- 43.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mlxip/MA0622.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CACGTGTGTG
GCACGTGT---
 A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CACGTGTGTG
GGCACGTGTC--
 A C G T A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGTGTG-----
NNGCGTGTGTGCNGCN
 A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

CLOCK/MA0819.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGTGTG
AACACGTGTT--
 A C G T A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CACGTGTGTG
CACGTGBN--
 A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CACGTGTGTG
GNCACGTG----
 A C G T A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CACGTGTGTG
CACGTG----
 A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CACGTGTGTG
GHCACGTG----
 A C G T A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGTGTG
TCACGTGC---
 A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T

MAX/MA0058.3/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGTGTG
NNCACGTGGT--
 A C G T A C G T A T G C C T G A G A T C A C T G A G C T A C T G A C G T C T A G A C G T C T A G
C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T A C G T A C G T