Information for 7-GTCGTGCATA (Motif 9)

A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A
Reverse Opposite:
C G A T C G T A A C G T A C T G G T A C C G T A A G T C A C T G C G T A A G T C
p-value:1e-10
log p-value:-2.411e+01
Information Content per bp:1.894
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.5 +/- 24.9bp
Average Position of motif in Background62.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTCGTGCATA---
---ATGMATATDC
 A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTCGTGCATA-----
AAAATATGCATAATAAA
 A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0096.1_Zfp187_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTCGTGCATA-
TTATTAGTACATAN
 A C G T A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCGTGCATA-
GGGATTGCATNN
 A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCGTGCATA---
---ATGAATATTC
 A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTCGTGCATA---
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCGTGCATA-----
CAGATGTGCACATACGT
 A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCGTGCATA-----
TACATGTGCACATAAAA
 A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCGTGCATA---
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTCGTGCATA--
TCCGTCGCTTAAAAG
 A C G T A C G T A C G T A C T G A C G T G T A C C T A G A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G