Information for 4-GAGGGCAGTA (Motif 2)

T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
Reverse Opposite:
G C A T C T G A A G T C A C G T A C T G A G T C A G T C G T A C A G C T A G T C
p-value:1e-55
log p-value:-1.284e+02
Information Content per bp:1.869
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif10.07%
Number of Background Sequences with motif482.4
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets52.3 +/- 16.8bp
Average Position of motif in Background51.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAGTA
TNNGGGCAG--
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAGTA
NGTGGGCAT--
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAGTA-----
NNNTGGCAGTTGGTNN
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAGTA
TRAGGTCA---
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAGTA
AGRGGTCA---
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAGTA
GGTTGGCAT--
 A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGGGCAGTA--
--TGGCAGTTGN
 T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A A C G T A C G T
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:-9
Orientation:reverse strand
Alignment:---------GAGGGCAGTA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCAGTA
CAAAGGTCAG--
 A C G T A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGCAGTA--
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A A C T G A C T G A C T G A G T C C G T A A C T G A G C T C G T A A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C