Information for 2-KCTCTGWCAKTCTMAK (Motif 2)

A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
Reverse Opposite:
T G A C G A C T A C T G T C G A A C T G C G T A G T C A A C G T A T C G G C T A A G T C C G T A A C T G C T G A T A C G G T A C
p-value:1e-14
log p-value:-3.422e+01
Information Content per bp:1.697
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets67.3 +/- 24.1bp
Average Position of motif in Background56.5 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK
--NCTGTCAATCAN--
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---KCTCTGWCAKTCTMAK
NNNCAGCTGTCAATATN--
 A C G T A C G T A C G T A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK
--SCTGTCAVTCAV--
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK
-VGCTGWCAVB-----
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KCTCTGWCAKTCTMAK
--GCAGTGATTT----
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK
-GSCTGTCACTCA---
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:KCTCTGWCAKTCTMAK
---CNGTGATTTN---
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK
---YTGWCADY-----
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:KCTCTGWCAKTCTMAK
-TGCTGTGATTT----
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G
A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:KCTCTGWCAKTCTMAK----
----TAAGATTATAATACGG
 A C T G A G T C A G C T A G T C C G A T C T A G C G A T A T G C C G T A A C G T A C G T G T A C A C G T G T A C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G