Information for 5-CTCTSYCAGCAGK (Motif 9)

A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C C G A T A C T G A G T C A C G T A C T G T C A G A T G C C G T A A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.348e+01
Information Content per bp:1.891
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 28.9bp
Average Position of motif in Background67.6 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTCTSYCAGCAGK---
-CCACACAGCAGGAGA
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTCTSYCAGCAGK---
-CCACACAGCAGGAGA
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CTCTSYCAGCAGK---
----CACAGCAGGGGG
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTCTSYCAGCAGK
-TGAGTCAGCA--
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCTSYCAGCAGK
---DCTCAGCAGG
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCTSYCAGCAGK-----
---DCHCAGCAGGRGGCC
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTCTSYCAGCAGK
-SCTGTCARCACC
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G
A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCTSYCAGCAGK--
CTGAGTCAGCAATTT
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

MAFF/MA0495.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCTSYCAGCAGK----
GCTGAGTCAGCAATTTTT
 A C G T A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTCTSYCAGCAGK--
----GTCAGCANNTN
 A G T C A C G T A G T C A C G T A T C G A G C T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T