Information for 3-ATGGATGACTCAGAGA (Motif 8)

C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
Reverse Opposite:
C A G T G T A C A C G T A G T C C G A T C A T G C G T A A C T G A C G T G T A C G T C A A G C T A G T C G T A C C G T A G A C T
p-value:1e-11
log p-value:-2.561e+01
Information Content per bp:1.688
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif42.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.2 +/- 22.7bp
Average Position of motif in Background48.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGGATGACTCAGAGA
ATGCATAATTCA----
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T

FOSL2/MA0478.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATGGATGACTCAGAGA
--GGATGACTCAT---
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
A C G T A C G T A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGACTCAGAGA-
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T A C G T C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A A C G T
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

JUNB/MA0490.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATGGATGACTCAGAGA
--GGATGACTCAT---
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
A C G T A C G T C A T G C T A G T C G A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ATGGATGACTCAGAGA--
CTGNNNNNNNCAGATAAG
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A A C G T A C G T
T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATGGATGACTCAGAGA
ATGATKGATGRC-------
 A C G T A C G T A C G T C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ATGGATGACTCAGAGA
---NATGAGTCANN--
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
A C G T A C G T A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATGACTCAGAGA
NTATCGATTA--------
 A C G T A C G T C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATGACTCAGAGA
TCATGAATWATTCAT---
 A C G T A C G T C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T A C G T A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGGATGACTCAGAGA
ATTGATGAGTCACCAA
 C G T A A C G T C A T G C T A G C T G A A C G T C A T G T C G A A G T C C G A T G T A C C G T A C T A G C G T A C A T G G C T A
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A