Information for 1-YAGGGCATTC (Motif 3)

G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C
Reverse Opposite:
C A T G G T C A C G T A C G A T A C T G A G T C A T G C A G T C C G A T C T A G
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.760
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif229.8
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets47.4 +/- 30.8bp
Average Position of motif in Background51.2 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----YAGGGCATTC--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-YAGGGCATTC
NGTGGGCAT--
 A C G T G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---YAGGGCATTC
WDNCTGGGCA---
 A C G T A C G T A C G T G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YAGGGCATTC----
-AGGGGAATCCCCT
 G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YAGGGCATTC
TNNGGGCAG--
 A C G T G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YAGGGCATTC
TRAGGTCA---
 A C G T G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YAGGGCATTC--
----ACATTCCA
 G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

NFKB2/MA0778.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:YAGGGCATTC----
-AGGGGAATCCCCT
 G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:YAGGGCATTC---
---CACATTCCAT
 G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:YAGGGCATTC----
----RCATTCCWGG
 G A T C C G T A A C T G T A C G A C T G A G T C C G T A G C A T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G