Information for 9-GATCCATAGCCAT (Motif 18)

A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C C G A T C G T A A C G T A C T G A C T G G T C A A C G T G T A C
p-value:1e-6
log p-value:-1.508e+01
Information Content per bp:1.935
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 11.7bp
Average Position of motif in Background49.2 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATCCATAGCCAT
DGATCRATAN----
 A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GATCCATAGCCAT---
-ATGAATATTCATGAG
 A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GATCCATAGCCAT-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GATCCATAGCCAT--
YATGCATATRCATRT
 A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

CUX1/MA0754.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GATCCATAGCCAT
TAATCGATAA----
 A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GATCCATAGCCAT---
-TACCATAGCAACGGT
 A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GATCCATAGCCAT
TAATCGATAA----
 A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GATCCATAGCCAT
--AAGATATCCTT
 A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GATCCATAGCCAT
--GCCACACCCA-
 A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GATCCATAGCCAT
TGATTTATGGCC--
 A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T C G T A A C T G G T A C A G T C C G T A A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T