Information for 1-RTCTTTGTAAATGTGA (Motif 1)

C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
Reverse Opposite:
A C G T A G T C G T C A A G T C C G T A A C G T A G C T A C G T C T G A A G T C C G T A C G T A C G T A A T C G C G T A A G C T
p-value:1e-14
log p-value:-3.317e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 18.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
---TATGTAAATAT--
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
---TATGCAAAT----
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
---TATGCAAAT----
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
TTGTATGCAAATTAGA
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
TTGTATGCAAATTAGA
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
TTGTATGCAAATTAGA
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
---WATGCAAATGAG-
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
--ATATGCAAAT----
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RTCTTTGTAAATGTGA
-AATATGCAAATT---
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:RTCTTTGTAAATGTGA
--TTATGCAAAT----
 C T A G C G A T A T G C A C G T C G A T A C G T A C T G A G C T C G T A C T G A C G T A C G A T C T A G C A G T T A C G C G T A
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T