Information for 2-CAGACACAGGTTCTGA (Motif 7)

A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
Reverse Opposite:
C G A T A T G C C G T A A C T G C G T A T C G A G T A C A T G C C G A T A T C G A C G T C A T G A C G T A G T C C G A T C T A G
p-value:1e-11
log p-value:-2.667e+01
Information Content per bp:1.784
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.6 +/- 23.7bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGACACAGGTTCTGA
--GTCACGCTCNCTGA
 A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PB0047.1_Myf6_1/Jaspar

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGACACAGGTTCTGA
CNGACACCTGTTCNNN
 A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAGACACAGGTTCTGA
--AACAGATGGTCN--
 A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
A C G T A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACAGGTTCTGA---
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACAGGTTCTGA
BCAGACWA---------
 A C G T A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:6
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CAGACACAGGTTCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACAGGTTCTGA
CCAGACAG---------
 A C G T A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:8
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CAGACACAGGTTCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.49
Offset:11
Orientation:forward strand
Alignment:CAGACACAGGTTCTGA-
-----------GCTGTG
 A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

MYF6/MA0667.1/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:CAGACACAGGTTCTGA
--AACAGCTGTT----
 A G T C C G T A C T A G G T C A G A T C G T C A A T G C C G T A T A C G A C T G A G C T A C G T A G T C A C G T A T C G C G T A
A C G T A C G T T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T A C G T A C G T A C G T A C G T