Information for 4-TRAGTWCCCAYKG (Motif 6)

A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G
Reverse Opposite:
G T A C G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A A G T C A C G T A G C T C G T A
p-value:1e-11
log p-value:-2.667e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 25.4bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TRAGTWCCCAYKG
--HTTTCCCASG-
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G
A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TRAGTWCCCAYKG------
--TGTTCCCATTGTGTACT
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TRAGTWCCCAYKG---
--NGTTGCCATGGCAA
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TRAGTWCCCAYKG---
--GGTTGCCATGGCAA
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TRAGTWCCCAYKG
TTAAGTGCTT----
 A C G T A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TRAGTWCCCAYKG----
---GTTGCCATGGNAAC
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TRAGTWCCCAYKG--
GGGTGTGCCCAAAAGG
 A C G T A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TRAGTWCCCAYKG-----
---GTTGCCATGGCAACM
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TRAGTWCCCAYKG-----
--CGTTGCCATGGCAACN
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TRAGTWCCCAYKG
---ATGCCCACC-
 A C G T C T G A C G T A A C T G A C G T C G A T A G T C A G T C A G T C C G T A A G C T C A G T A C T G
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T