Information for 1-KTTTAWTGAYCCWGTC (Motif 4)

A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
Reverse Opposite:
A C T G G T C A G T A C C G T A C T A G C T A G C T A G A C G T T G A C G C T A C G A T G C A T C T G A C T G A C T G A T G C A
p-value:1e-12
log p-value:-2.791e+01
Information Content per bp:1.681
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif32.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets52.9 +/- 22.8bp
Average Position of motif in Background56.2 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KTTTAWTGAYCCWGTC
NNAATTAATGACCNNN--
 A C G T A C G T A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----KTTTAWTGAYCCWGTC
NTNAATTTTATTGNATT----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----KTTTAWTGAYCCWGTC
NGANTTTTATGGCTCN----
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----KTTTAWTGAYCCWGTC
NNANTTTTATTGGNNN----
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KTTTAWTGAYCCWGTC
-TTTAAT---------
 A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:KTTTAWTGAYCCWGTC
TTTTATGGCTN-----
 A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:KTTTAWTGAYCCWGTC
TTTTTATTGC------
 A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--KTTTAWTGAYCCWGTC
NAATTTTATTACCTNN--
 A C G T A C G T A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:KTTTAWTGAYCCWGTC
--TTAATTAN------
 A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:KTTTAWTGAYCCWGTC
NTTTTACGAC------
 A C G T A G C T A G C T A G C T C G T A C G T A C A G T A C T G T G C A A G T C G A T C A G T C C G A T C A T G C A G T A G T C
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T