Information for 2-AGCAAATATT (Motif 3)

C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
Reverse Opposite:
G T C A C T G A A C G T C G T A C G A T C G A T C G A T T C A G T A G C G C A T
p-value:1e-12
log p-value:-2.937e+01
Information Content per bp:1.833
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif529.4
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets42.1 +/- 27.0bp
Average Position of motif in Background49.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:AGCAAATATT------
--CTAATATTGCTAAA
 C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:AGCAAATATT------
--CTAATATTGCTAAA
 C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGCAAATATT
WAAGTAAAYA--
 A C G T A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AGCAAATATT
---AATTATT
 C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCAAATATT-
AAACAAACATTC
 A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCAAATATT
TATGTAAATAT-
 A C G T A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCAAATATT
TATGTAAATAT-
 A C G T A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGCAAATATT----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGCAAATATT----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Nobox/MA0125.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCAAATATT
ACCAATTA--
 C G T A A T C G A G T C G C T A C G T A C G T A A C G T C G T A A G C T A C G T
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T