Information for 8-AATTTGCTTAAAATAA (Motif 20)

C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
Reverse Opposite:
A C G T C G A T C G T A C G A T G A C T A C G T C G A T G C T A C T G A C T A G T G A C C G T A C G T A C G T A A C G T C G A T
p-value:1e-9
log p-value:-2.083e+01
Information Content per bp:1.798
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif14.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets63.6 +/- 23.5bp
Average Position of motif in Background50.9 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou2f3/MA0627.1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGCTTAAAATAA
TNTAATTTGCATACNA---
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGCTTAAAATAA
TNTAATTTGCATACNA---
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGCTTAAAATAA
AAATTAGCATAAT----
 A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGCTTAAAATAA
TNTAATTTGCATANNN---
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGCTTAAAATAA
TAATTTGCATAA-----
 A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGCTTAAAATAA
TAATTTGCATAA-----
 A C G T C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATTTGCTTAAAATAA
-ATTTGCATAA-----
 C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AATTTGCTTAAAATAA
AATTTGCATANT----
 C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AATTTGCTTAAAATAA-
-----GCTAAAAATAGC
 C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AATTTGCTTAAAATAA
-ATTTGCATAACAATG
 C G T A C G T A A C G T C G A T A C G T A C T G G A T C A G C T C A G T C G T A C G T A C G T A C G T A C G A T C G T A C G T A
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G