Information for 1-TTGTYYAGWGGGW (Motif 2)

C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
Reverse Opposite:
C G A T A G T C G T A C A G T C C G T A A G T C A C G T C T A G C T G A C G T A A G T C C G T A C G T A
p-value:1e-14
log p-value:-3.284e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 16.1bp
Average Position of motif in Background67.9 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGTYYAGWGGGW--
AATTTCAAGTGGCTTN
 A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TTGTYYAGWGGGW
CNNNTATTGTTCNNNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTGTYYAGWGGGW
--BTBRAGTGSN-
 C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTGTYYAGWGGGW----
-TGCGGAGTGGGACTGG
 C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTGTYYAGWGGGW
ATTGTTTAN-----
 A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGTYYAGWGGGW---
NTNNTTAAGTGGNTNAN
 A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Foxq1/MA0040.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTGTYYAGWGGGW
TATTGTTTATT----
 A C G T A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTGTYYAGWGGGW
ATTGTT--------
 A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTGTYYAGWGGGW--
NANTTTCAAGTGGTTAN
 A C G T A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGTYYAGWGGGW--
AANTTCAAGTGGCTTN
 A C G T C G A T A C G T C T A G A C G T A G C T A G T C C G T A A C T G C G A T A C T G A C T G A C T G C G T A A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A