Information for 11-GGGCAGGCAGACT (Motif 18)

A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T
Reverse Opposite:
C G T A A C T G A C G T A T G C C G A T C A T G A G T C G T A C C G A T A C T G A G T C A T G C A G T C
p-value:1e-9
log p-value:-2.130e+01
Information Content per bp:1.689
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif77.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets41.8 +/- 20.6bp
Average Position of motif in Background49.1 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAGGCAGACT
TNNGGGCAG-------
 A C G T A C G T A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGCAGGCAGACT--
GGTCANNGTGACCTN
 A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAGGCAGACT
NGTGGGCAT-------
 A C G T A C G T A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGCAGGCAGACT-
AGGNCANNGTGACCT
 A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GGGCAGGCAGACT
NNNNTTGGGCACNNCN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGGCAGGCAGACT-
TGGCAGNCTGCCAG
 A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GGGCAGGCAGACT---
------CCAGACRSVB
 A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGCAGGCAGACT
WDNCTGGGCA--------
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGGCAGGCAGACT--
AAGGTCACGGTGACCTG
 A C G T A C G T A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGGCAGGCAGACT-
------BCAGACWA
 A C T G A T C G C T A G G T A C C G T A A C T G T A C G G A T C C G T A A T C G G T C A T G A C C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A