Information for 5-TCCTTGGCAA (Motif 17)

A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A
Reverse Opposite:
A C G T C G A T A T C G A T G C G A T C G C T A C T G A C A T G C T A G G T C A
p-value:1e-9
log p-value:-2.193e+01
Information Content per bp:1.699
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif8.75%
Number of Background Sequences with motif1634.2
Percentage of Background Sequences with motif3.35%
Average Position of motif in Targets51.9 +/- 26.5bp
Average Position of motif in Background49.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TCCTTGGCAA
--CTTGGCAA
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TCCTTGGCAA-
-NNTTGGCANN
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCCTTGGCAA-
--NTTGGCANN
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCTTGGCAA----
TACCATAGCAACGGT
 A C G T A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCCTTGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTGGCAA--------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TCCTTGGCAA
---TTGGCA-
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCCTTGGCAA---
-SCCTAGCAACAG
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCCTTGGCAA-
TTCTTGGAAAN
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A A C G T
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCCTTGGCAA
TTCTNMGGAA
 A C G T G A T C G T A C A G C T C G A T C T A G T A C G T A G C C G T A C G T A
C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A