Information for 9-CTTTAAAAGTTAA (Motif 16)

A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A C G T A G T A C A C G T C A G T A G C T C G A T G T C A G T C A C T G A C T A G
p-value:1e-9
log p-value:-2.233e+01
Information Content per bp:1.831
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif128.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets59.8 +/- 20.6bp
Average Position of motif in Background48.1 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CTTTAAAAGTTAA
----AAAAGTCAA
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A
A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTTTAAAAGTTAA
GNCTATAAAAGG---
 A C G T A C G T A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTTAAAAGTTAA--
--TTAATGTTTAACC
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTTTAAAAGTTAA------
--NNNTTAGTTAACTNANN
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTTTAAAAGTTAA---
----GAAAGTGAAAGT
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

PRDM1/MA0508.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTTAAAAGTTAA-----
---AGAAAGTGAAAGTGA
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTTTAAAAGTTAA------
--NTTTTAGTTAACNNAGN
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PB0109.1_Bbx_2/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTTTAAAAGTTAA-------
---TGATTGTTAACAGTTGG
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTTTAAAAGTTAA---
----GAAAMTGAAACT
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTTTAAAAGTTAA---
----GAAAGTGAAAGT
 A G T C A G C T A C G T A C G T C G T A T C G A G T C A G T C A A C T G A C G T C A G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T