Information for 10-GARATGTGCCAAG (Motif 21)

C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
Reverse Opposite:
A G T C C G A T A C G T A C T G A C T G G T A C C G T A G A T C C G T A G A C T A G T C A G C T G T A C
p-value:1e-8
log p-value:-1.884e+01
Information Content per bp:1.730
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif45.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets55.6 +/- 25.7bp
Average Position of motif in Background50.3 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:GARATGTGCCAAG-
----GGTGCCAAGT
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GARATGTGCCAAG
----CGTGCCAAG
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:GARATGTGCCAAG
------TGCCAA-
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.67
Offset:5
Orientation:forward strand
Alignment:GARATGTGCCAAG
-----TTGCCAAG
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GARATGTGCCAAG-
-----ATGCCAACC
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GARATGTGCCAAG
---CTGTTCCTGG
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GARATGTGCCAAG-
-----ATGCCCACC
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GARATGTGCCAAG
--NATGTTGCAA-
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GARATGTGCCAAG--
-TTATGTACTAATAA
 C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G A C G T A C G T
A C G T A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

MTF1/MA0863.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GARATGTGCCAAG
GTGCCGTGTGCAAA-
 A C G T A C G T C A T G C T G A T C A G C T G A C G A T C A T G C G A T C A T G A G T C G T A C C G T A C G T A C T A G
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T