Information for 1-AAAAATAAACTAT (Motif 2)

G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
Reverse Opposite:
C G T A C G A T C G T A T C A G C A G T C G A T A G C T C T G A C G A T A C G T A C G T A C G T C G A T
p-value:1e-12
log p-value:-2.781e+01
Information Content per bp:1.747
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif217.6
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets40.7 +/- 29.0bp
Average Position of motif in Background52.9 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxq1/MA0040.1/Jaspar

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:AAAAATAAACTAT-
---AATAAACAATN
 G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T A C G T
A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AAAAATAAACTAT-
--AAACAAACATTC
 G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T A C G T
A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AAAAATAAACTAT
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AAAAATAAACTAT
ATGCTAAAAATAGAA---
 A C G T A C G T A C G T A C G T A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAAAATAAACTAT
DCYAAAAATAGM----
 A C G T A C G T A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAAATAAACTAT---
TAAATGTAAACAAAGGT
 A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T A C G T A C G T A C G T
C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AAAAATAAACTAT
--AAATAAACA--
 G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAAATAAACTAT---
AAAAAGTAAACAAACAC
 A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAAATAAACTAT---
AAAAAGTAAACAAACAC
 A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0116.1_Elf3_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AAAAATAAACTAT
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T G C T A T G C A T G C A C G T A C G T A G A C T C T G A C G T A G T C A A G T C C G A T G C T A G C A T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C