Information for 5-ATATVTCCCTTGTTGG (Motif 8)

C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
Reverse Opposite:
A G T C G T A C C G T A C G T A G T A C C G T A C T G A A T C G C T A G C T A G C G T A A G T C C G T A G C A T G T C A A C G T
p-value:1e-11
log p-value:-2.719e+01
Information Content per bp:1.774
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 18.8bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATATVTCCCTTGTTGG---
--NNNTCCTTTGTTCTNNN
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATATVTCCCTTGTTGG---
--TNNTCCTTTGTTCTNNT
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----ATATVTCCCTTGTTGG
ATGGGATATATCCGCCT----
 A C G T A C G T A C G T A C G T A C G T C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ATATVTCCCTTGTTGG
------CCWTTGTY--
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:ATATVTCCCTTGTTGG
------CCTTTGTT--
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:ATATVTCCCTTGTTGG
-----NCCATTGTTC-
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------ATATVTCCCTTGTTGG
NNNCTGATATCTCNNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:ATATVTCCCTTGTTGG
------CCATTGTTYB
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:ATATVTCCCTTGTTGG--
--ANNTCCATTGTTCNNN
 C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G A C G T A C G T
A C G T A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-ATATVTCCCTTGTTGG
AAGATATCCTT------
 A C G T C G T A C A G T C G T A C G A T T C A G C G A T G A T C G A T C A T G C A G C T A C G T A C T G C G A T A C G T A C T G C T A G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T