Information for 3-GRACAGAACWTCC (Motif 4)

C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
C T A G A C T G G T C A C G A T A C T G A C G T G C A T A G T C A C G T A C T G A C G T A G C T A G T C
p-value:1e-12
log p-value:-2.931e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 22.1bp
Average Position of motif in Background41.4 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GRACAGAACWTCC--
GVACAGNMTGTYCTB
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GRACAGAACWTCC
GCAAAACATTACTA--
 A C G T A C G T A C G T C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GRACAGAACWTCC
CCAGGAACAG-------
 A C G T A C G T A C G T A C G T C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GRACAGAACWTCC--
GRACAGWMTGTYCTB
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GRACAGAACWTCC
-CACAGN------
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GRACAGAACWTCC
-AACAGGAAGT--
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GRACAGAACWTCC
TGGAACAGMA-----
 A C G T A C G T C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GRACAGAACWTCC------
-----NNACTTCCTCTTNN
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GRACAGAACWTCC
-NACAGGAAAT--
 C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C
A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GRACAGAACWTCC--
AGNACANNNTGTNCTN
 A C G T C T A G C T G A C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C G T A G T C A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C