Information for 12-CACAATAGGCTAGATC (Motif 27)

A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C G T G T C A A C T G A G T C A G T C A G C T C T G A A C G T C G A T A C T G A C G T A C T G
p-value:1e-4
log p-value:-9.652e+00
Information Content per bp:1.934
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 22.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACAATAGGCTAGATC
CTCACACAATGGCGC-----
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CACAATAGGCTAGATC
TCACGGAACAATAGGTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACAATAGGCTAGATC
GACAATGNN-------
 A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CACAATAGGCTAGATC
NNTNNACAATGGGANNN---
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACAATAGGCTAGATC
GAACAATGG--------
 A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CACAATAGGCTAGATC
NNNNNGAACAATTGANN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CACAATAGGCTAGATC
RNAACAATGG--------
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CACAATAGGCTAGATC
GAACAATGGN-------
 A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CACAATAGGCTAGATC
RACAAWGG--------
 A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CACAATAGGCTAGATC
VRAACAATGG--------
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G C T C T G A A C T G A C T G G T A C A C G T C G T A A C T G C G T A A C G T A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T