Information for 9-TTAGGTGAAWTARTTT (Motif 17)

A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
Reverse Opposite:
C G T A G T C A G T C A G A T C A C G T C G T A C G A T A G C T C A G T T A G C C G T A A G T C A G T C A G C T G T C A C G T A
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.709
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.8 +/- 18.5bp
Average Position of motif in Background66.9 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3/MA0135.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTAGGTGAAWTARTTT
---GATTAATTAATTT
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
A C G T A C G T A C G T T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TTAGGTGAAWTARTTT
-----NTAATTAATAT
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT
ATATATTAATTAAGTA
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A

PH0050.1_Hoxa3/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT
TTGAGGTAATTAGT--
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.57
Offset:8
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT
--------AATAATT-
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

PH0001.1_Alx3/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTAGGTGAAWTARTTT-
NTNAGCTAATTAGTTNA
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

Hoxd3/MA0912.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT
TTGAGTTAATTAACCT
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT
TTGAGTTAATTAACCT
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0174.1_Vax1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTAGGTGAAWTARTTT
CTNNGNTAATTAACNT
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0011.1_Alx1_2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTAGGTGAAWTARTTT--
-CGCATTAATTAATTGGC
 A C G T A C G T C T G A T C A G T C A G C G A T A T C G G C T A C T G A C G T A A C G T C G T A C T A G C A G T A C G T C G A T A C G T A C G T
A C G T A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C