Information for 3-WRCCAAAGTA (Motif 13)

C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
Reverse Opposite:
C A G T T C G A G T A C G C A T C G A T C G A T C T A G A T C G G A T C C G T A
p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.690
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif4.10%
Number of Background Sequences with motif360.6
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets52.7 +/- 24.6bp
Average Position of motif in Background50.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:WRCCAAAGTA------
TGCCAAAATAAACANN
 C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:WRCCAAAGTA
TGCCAA----
 C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--WRCCAAAGTA
CGTGCCAAG---
 A C G T A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--WRCCAAAGTA
GGTGCCAAGT--
 A C G T A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----WRCCAAAGTA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:WRCCAAAGTA
--ACAAAG--
 C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:WRCCAAAGTA
-RACAAWGG-
 C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-WRCCAAAGTA
TTGCCAAG---
 A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-WRCCAAAGTA
VRRACAAWGG-
 A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----WRCCAAAGTA---
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T C G A T C T A G T A G C A G T C G C T A G C T A C G T A C A T G A G C T G T C A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A