p-value: | 1e-6 |
log p-value: | -1.604e+01 |
Information Content per bp: | 1.800 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 1.57% |
Number of Background Sequences with motif | 16.3 |
Percentage of Background Sequences with motif | 0.03% |
Average Position of motif in Targets | 47.6 +/- 17.2bp |
Average Position of motif in Background | 59.2 +/- 24.2bp |
Strand Bias (log2 ratio + to - strand density) | -2.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer
Match Rank: | 1 |
Score: | 0.65 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CCAGTCDGGCTCT- --TGTCTGDCACCT |
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SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar
Match Rank: | 2 |
Score: | 0.64 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | CCAGTCDGGCTCT- -CTGTCTGTCACCT |
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PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer
Match Rank: | 3 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCAGTCDGGCTCT GSCTGTCACTCA-- |
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Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 4 |
Score: | 0.54 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | CCAGTCDGGCTCT -CTGTCTGG---- |
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Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer
Match Rank: | 5 |
Score: | 0.54 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CCAGTCDGGCTCT NCTGTCAATCAN- |
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Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer
Match Rank: | 6 |
Score: | 0.53 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | CCAGTCDGGCTCT--- ------AASCACTCAA |
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Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer
Match Rank: | 7 |
Score: | 0.51 |
Offset: | 7 |
Orientation: | reverse strand |
Alignment: | CCAGTCDGGCTCT---- -------NSCACTYVAV |
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Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer
Match Rank: | 8 |
Score: | 0.51 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCAGTCDGGCTCT VBSYGTCTGG---- |
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PB0060.1_Smad3_1/Jaspar
Match Rank: | 9 |
Score: | 0.51 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---CCAGTCDGGCTCT- NNTNNTGTCTGGNNTNG |
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POL009.1_DCE_S_II/Jaspar
Match Rank: | 10 |
Score: | 0.51 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CCAGTCDGGCTCT GCTGTG------- |
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