Information for 6-CKGGAWCTKCCMTCMR (Motif 12)

A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
Reverse Opposite:
A G T C A C G T A C T G C G T A A C T G C T A G A C T G G T C A C G T A A C T G C G A T A C G T A G T C A G T C G T C A A C T G
p-value:1e-10
log p-value:-2.320e+01
Information Content per bp:1.850
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.8 +/- 15.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
--GGAAATTCCC----
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CKGGAWCTKCCMTCMR
-GGGAAATCCCCN---
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
-GGGAATTTCC-----
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CKGGAWCTKCCMTCMR
--GGAAANCCCC----
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
-GGGGATTTCC-----
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
------CTGCCCGCA-
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CKGGAWCTKCCMTCMR
ANCAGGATGT--------
 A C G T A C G T A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
-TGGAACAGMA-----
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR
AGGGGATTCCCCT---
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CKGGAWCTKCCMTCMR-
--AGAAATGACTTCCCT
 A G T C A C G T A C T G A C T G C G T A C G T A G T A C A C G T A C G T A G T C A G T C G T A C A C G T A G T C G T C A C T A G A C G T
A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T