Information for 3-TTTTATTGGC (Motif 3)

A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
Reverse Opposite:
C A T G T A G C G A T C G C T A C T G A C A G T C G T A G C T A T G C A T C G A
p-value:1e-24
log p-value:-5.657e+01
Information Content per bp:1.657
Number of Target Sequences with motif146.0
Percentage of Target Sequences with motif19.39%
Number of Background Sequences with motif3626.9
Percentage of Background Sequences with motif7.62%
Average Position of motif in Targets47.7 +/- 26.8bp
Average Position of motif in Background51.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
NTTTTATTGG-
 A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
TTTTTATTGG-
 A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGC
NTTTTATTGG-
 A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGC--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGC--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTTATTRGN
 A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGC
TTTTATKRGG
 A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGC--
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTAATTGCN
 A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGC
TTTTATTGC-
 A G C T A C G T C G A T G C A T G T C A G A C T C G A T C T A G A T C G G T A C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T