Information for 5-TGCCAATKTRCTTTGG (Motif 8)

C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
Reverse Opposite:
A T G C G T A C G T C A C T G A C T G A C T A G A G C T C G T A G T A C C G T A G A C T C A G T C A T G T A C G T G A C G T C A
p-value:1e-13
log p-value:-3.175e+01
Information Content per bp:1.590
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.16%
Number of Background Sequences with motif325.7
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets53.8 +/- 22.9bp
Average Position of motif in Background50.1 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGCCAATKTRCTTTGG--
--NNTGTTTATTTTGGCA
 C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G A C G T A C G T
A C G T A C G T C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TGCCAATKTRCTTTGG------
------TGGACTTTGNNCTNTG
 C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TGCCAATKTRCTTTGG-----
------TGGACTTTGNNCTCN
 C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.54
Offset:12
Orientation:forward strand
Alignment:TGCCAATKTRCTTTGG--
------------TTGGCA
 C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATKTRCTTTGG
WATGCAAATGAG------
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATKTRCTTTGG
GGTGCCAAGT--------
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATKTRCTTTGG
TAAACTAATTAGCTTTG-
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.51
Offset:11
Orientation:reverse strand
Alignment:TGCCAATKTRCTTTGG----
-----------NTTGGCANN
 C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAATKTRCTTTGG
ATATGCAAATNNN------
 A C G T A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATKTRCTTTGG
TATGCWAATBAV------
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T G A C G A T C A T G G C A T T C G A G A T C G A C T G A C T C A G T C A T G A T C G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T